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1

Union and Distinction in the Thought of St Maximus the Confessor || Nature, Difference, and Number

Törönen, Melchisedec

Year:

2007

Language:

english

File:

PDF, 113 KB

english, 2007

2

Analysis and visualization of gene expression data using Self-Organizing Maps

Janne Nikkilä, Petri Törönen, Samuel Kaski, Jarkko Venna, Eero Castrén, Garry Wong

Journal:

Neural Networks

Year:

2002

Language:

english

File:

PDF, 2.67 MB

english, 2002

3

PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment

Koskinen, P., Toronen, P., Nokso-Koivisto, J., Holm, L.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.52 MB

english, 2015

4

Transcriptome teleonomy and scavenger lipidomics of albumin and alpha 1-acid glycoproteins: contextual genome-wide ontology enrichment as evidence for the epigenetic code?

Pauli Ojala, Sami Kilpinen, Lotta Arola, Petri Törönen, Elmar Bucher, Kalle Ojala, Kristiina Iljin, Mari Peltonen, Rolf Skotheim, Kristine Kleivi, Martti Tolvanen, Reija Autio, Pentti Somerharju, Olli

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 50 KB

english, 2007

5

Antipsychotic drug treatment induces differential gene expression in the rat cortex

Outi Kontkanen, Petri Törönen, Merja Lakso, Garry Wong, Eero Castrén

Journal:

Journal of Neurochemistry

Year:

2002

Language:

english

File:

PDF, 254 KB

english, 2002

6

Brain-derived neurotrophic factor signaling modifies hippocampal gene expression during epileptogenesis in transgenic mice

Sari Lähteinen, Asla Pitkänen, Juha Knuuttila, Petri Törönen, Eero Castrén

Journal:

European Journal of Neuroscience

Year:

2004

Language:

english

File:

PDF, 213 KB

english, 2004

7

Expression Profiling to Understand Actions of NMDA/Glutamate Receptor Antagonists in Rat Brain

Petri Törönen, Marcus Storvik, Anni-Maija Lindén, Outi Kontkanen, Markéta Marvanová, Merja Lakso, Eero Castrén, Garry Wong

Journal:

Neurochemical Research

Year:

2002

Language:

english

File:

PDF, 2.68 MB

english, 2002

8

Effects of Antidepressant Drug Imipramine on Gene Expression in Rat Prefrontal Cortex

Juha E. A. Knuuttila, Petri Törönen, Eero Castrén

Journal:

Neurochemical Research

Year:

2004

Language:

english

File:

PDF, 178 KB

english, 2004

9

Interspliced transcription chimeras: Neglected pathological mechanism infiltrating gene accession queries?

Martti Tolvanen, Pauli J. Ojala, Petri Törönen, Heidi Anderson, Jukka Partanen, Hannu Turpeinen

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 344 KB

english, 2009

10

Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function

Petri Törönen, Pauli J Ojala, Pekka Marttinen, Liisa Holm

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 646 KB

english, 2009

11

Trustworthiness and metrics in visualizing similarity of gene expression

Samuel Kaski, Janne Nikkilä, Merja Oja, Jarkko Venna, Petri Törönen, Eero Castrén

Journal:

BMC Bioinformatics

Year:

2003

Language:

english

File:

PDF, 389 KB

english, 2003

12

Selection of informative clusters from hierarchical cluster tree with gene classes

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 722 KB

english, 2004

13

Theme discovery from gene lists for identification and viewing of multiple functional groups

Petri Pehkonen, Garry Wong, Petri Törönen

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.17 MB

english, 2005

14

Ozonation for the Degradation of Organic Compounds from Nuclear Laundry Water

Vilve, Miia, Törönen, Teemu, Sillanpää, Mika

Journal:

Ozone Science & Engineering

Year:

2008

Language:

english

File:

PDF, 427 KB

english, 2008

15

Analysis of gene expression data using self-organizing maps

Petri Törönen, Mikko Kolehmainen, Garry Wong, Eero Castrén

Journal:

Year:

1999

Language:

english

File:

PDF, 402 KB

english, 1999

16

Synexpression analysis of ESTs in the rat brain reveals distinct patterns and potential drug targets

M Marvanová, P Törönen, M Storvik, M Lakso, E Castrén, G Wong

Journal:

Molecular Brain Research

Year:

2002

Language:

english

File:

PDF, 802 KB

english, 2002

17

Generation of Gene Ontology benchmark datasets with various types of positive signal

Petri Törönen, Petri Pehkonen, Liisa Holm

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 301 KB

english, 2009

18

Changes in gene expression in atherosclerotic plaques analyzed using DNA array

Mikko O Hiltunen, Tiina T Tuomisto, Mari Niemi, Jan H Bräsen, Tuomas T Rissanen, Petri Törönen, Ismo Vajanto, Seppo Ylä-Herttuala

Journal:

Atherosclerosis

Year:

2002

Language:

english

File:

PDF, 655 KB

english, 2002

19

GOParGenPy: a high throughput method to generate Gene Ontology data matrices

Kumar, Ajay, Holm, Liisa, Toronen, Petri

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 365 KB

english, 2013

20

Gene set analysis: limitations in popular existing methods and proposed improvements

Mishra, P., Toronen, P., Leino, Y., Holm, L.

Journal:

Year:

2014

Language:

english

File:

PDF, 574 KB

english, 2014

21

Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic Regions

Pehkonen, P., Wong, G., Toronen, P.

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.12 MB

english, 2010

22

[IEEE 1987 The Ninth International Telecommunications Energy Conference - Stockholm, Sweden (1987.06.14-1987.06.17)] INTELEC '87 - The Ninth International Telecommunications Energy Conference - Design of a Photovoltaic Power System and Experiences from a PV-project in Nepal

Korhonen, Jorma, Ikkala, Olli, Toronen, Timo

Year:

1987

Language:

english

File:

PDF, 4.28 MB

english, 1987

23

Defense-related transcription factors WRKY70 and WRKY54 modulate osmotic stress tolerance by regulating stomatal aperture in Arabidopsis

Li, Jing, Besseau, Sebastien, Törönen, Petri, Sipari, Nina, Kollist, Hannes, Holm, Liisa, Palva, E. Tapio

Journal:

New Phytologist

Year:

2013

Language:

english

File:

PDF, 2.43 MB

english, 2013

24

Revised Phylogeny and Novel Horizontally Acquired Virulence Determinants of the Model Soft Rot Phytopathogen Pectobacterium wasabiae SCC3193

Nykyri, Johanna, Niemi, Outi, Koskinen, Patrik, Nokso-Koivisto, Jussi, Pasanen, Miia, Broberg, Martin, Plyusnin, Ilja, Törönen, Petri, Holm, Liisa, Pirhonen, Minna, Palva, E. Tapio, Tyler, Brett

Journal:

Year:

2012

Language:

english

File:

PDF, 1.42 MB

english, 2012

25

POXO: a web-enabled tool series to discover transcription factor binding sites

Kankainen, M., Pehkonen, P., Rosenstom, P., Toronen, P., Wong, G., Holm, L.

Journal:

Nucleic Acids Research

Year:

2006

Language:

english

File:

PDF, 619 KB

english, 2006

26

Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana

Kankainen, M., Brader, G., Toronen, P., Palva, E. T., Holm, L.

Journal:

Nucleic Acids Research

Year:

2006

Language:

english

File:

PDF, 972 KB

english, 2006

27

Robust multi-group gene set analysis with few replicates

Pashupati P. Mishra,Alan Medlar,Liisa Holm,Petri Törönen

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 2.78 MB

english, 2016

28

Mlh1 deficiency in normal mouse colon mucosa associates with chromosomally unstable colon cancer

Pussila, Marjaana, Törönen, Petri, Einarsdottir, Elisabet, Katayama, Shintaro, Krjutškov, Kaarel, Holm, Liisa, Kere, Juha, Peltomäki, Päivi, Mäkinen, Markus J, Linden, Jere, Nyström, Minna

Journal:

Year:

2018

Language:

english

File:

PDF, 1.15 MB

english, 2018

29

PANNZER2: a rapid functional annotation web server

Törönen, Petri, Medlar, Alan, Holm, Liisa

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 224 KB

english, 2018

30

AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination

Medlar, Alan J, Törönen, Petri, Holm, Liisa

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.35 MB

english, 2018

31

Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences

Plyusnin, Ilya, Holm, Liisa, Törönen, Petri, Radivojac, Predrag

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.10 MB

english, 2019